STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sqstm1Sequestosome 1. (438 aa)    
Predicted Functional Partners:
traf6
TNF receptor associated factor 6.
    
 0.992
ENSBSLP00000037601
Ubiquitin B.
   
 0.976
ENSBSLP00000001361
Microtubule-associated protein 1 light chain 3 alpha.
   
 0.969
LOC114860012
Next to BRCA1 gene 1 protein-like.
    
 0.969
nbr1
NBR1 autophagy cargo receptor.
    
 0.969
map1lc3b
Microtubule associated protein 1 light chain 3 beta.
   
 0.969
prkcz
Protein kinase C zeta.
    
 0.962
prkci
Protein kinase C iota.
    
 0.962
ENSBSLP00000004992
TANK-binding kinase 1.
    
 0.958
gabarapl2
GABA type A receptor associated protein like 2.
   
 0.952
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.