STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114856269Protein APCDD1-like. (519 aa)    
Predicted Functional Partners:
LOC114864912
Malate synthase-like.
  
 
  0.800
LOC114870611
Peripheral plasma membrane protein CASK-like.
   
  0.648
cask
Calcium/calmodulin dependent serine protein kinase.
   
  0.648
rps7
Ribosomal protein S7.
    
  0.579
rps6
Ribosomal protein S6.
   
  0.579
utp11
UTP11 small subunit processome component.
    
  0.579
dcaf13
DDB1 and CUL4 associated factor 13.
    
  0.579
emg1
EMG1 N1-specific pseudouridine methyltransferase.
   
  0.579
fcf1
FCF1 rRNA-processing protein.
    
  0.579
wdr46
WD repeat domain 46.
    
  0.567
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.