LOC114857884 protein (Betta splendens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC114857884

HMG box-containing protein 1-like. (476 aa)

Predicted Functional Partners:

sin3b

0.672

LOC114851916

0.672

sin3a

0.672

ENSBSLP00000029869

0.564

LOC114858286

0.506

LOC114856061

0.506

atxn1

0.506

atxn1l

0.486

LOC114864745

0.453

mtif2

0.433

Your Current Organism:

Betta splendens

NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSBSLP00000029869	LOC114857884	ENSBSLP00000029869	ENSBSLP00000017164	Ataxin 1b.	HMG box-containing protein 1-like.	0.564
ENSBSLP00000029869	atxn1l	ENSBSLP00000029869	ENSBSLP00000026015	Ataxin 1b.	Ataxin 1 like.	0.815
LOC114851916	LOC114857884	ENSBSLP00000025579	ENSBSLP00000017164	Paired amphipathic helix protein Sin3a-like.	HMG box-containing protein 1-like.	0.672
LOC114851916	sin3a	ENSBSLP00000025579	ENSBSLP00000029059	Paired amphipathic helix protein Sin3a-like.	SIN3 transcription regulator family member A.	0.926
LOC114856061	LOC114857884	ENSBSLP00000028028	ENSBSLP00000017164	Uncharacterized LOC114856061.	HMG box-containing protein 1-like.	0.506
LOC114856061	atxn1l	ENSBSLP00000028028	ENSBSLP00000026015	Uncharacterized LOC114856061.	Ataxin 1 like.	0.815
LOC114857884	ENSBSLP00000029869	ENSBSLP00000017164	ENSBSLP00000029869	HMG box-containing protein 1-like.	Ataxin 1b.	0.564
LOC114857884	LOC114851916	ENSBSLP00000017164	ENSBSLP00000025579	HMG box-containing protein 1-like.	Paired amphipathic helix protein Sin3a-like.	0.672
LOC114857884	LOC114856061	ENSBSLP00000017164	ENSBSLP00000028028	HMG box-containing protein 1-like.	Uncharacterized LOC114856061.	0.506
LOC114857884	LOC114858286	ENSBSLP00000017164	ENSBSLP00000020745	HMG box-containing protein 1-like.	Uncharacterized LOC114858286.	0.506
LOC114857884	LOC114864745	ENSBSLP00000017164	ENSBSLP00000014989	HMG box-containing protein 1-like.	E3 ubiquitin-protein transferase RMND5B-like.	0.453
LOC114857884	atxn1	ENSBSLP00000017164	ENSBSLP00000035009	HMG box-containing protein 1-like.	Ataxin 1.	0.506
LOC114857884	atxn1l	ENSBSLP00000017164	ENSBSLP00000026015	HMG box-containing protein 1-like.	Ataxin 1 like.	0.486
LOC114857884	mtif2	ENSBSLP00000017164	ENSBSLP00000002468	HMG box-containing protein 1-like.	Mitochondrial translational initiation factor 2.	0.433
LOC114857884	sin3a	ENSBSLP00000017164	ENSBSLP00000029059	HMG box-containing protein 1-like.	SIN3 transcription regulator family member A.	0.672
LOC114857884	sin3b	ENSBSLP00000017164	ENSBSLP00000005681	HMG box-containing protein 1-like.	SIN3 transcription regulator family member B.	0.672
LOC114858286	LOC114857884	ENSBSLP00000020745	ENSBSLP00000017164	Uncharacterized LOC114858286.	HMG box-containing protein 1-like.	0.506
LOC114858286	atxn1l	ENSBSLP00000020745	ENSBSLP00000026015	Uncharacterized LOC114858286.	Ataxin 1 like.	0.815
LOC114864745	LOC114857884	ENSBSLP00000014989	ENSBSLP00000017164	E3 ubiquitin-protein transferase RMND5B-like.	HMG box-containing protein 1-like.	0.453
atxn1	LOC114857884	ENSBSLP00000035009	ENSBSLP00000017164	Ataxin 1.	HMG box-containing protein 1-like.	0.506