STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114862868VPS10 domain-containing receptor SorCS3-like. (1258 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
     
 0.982
LOC114859424
Sortilin-like.
    
0.712
LOC114855942
Sortilin-like.
    
0.712
LOC114862661
Sortilin-like.
    
0.699
psmb1
Proteasome 20S subunit beta 1.
    
  0.676
psma1
Proteasome 20S subunit alpha 1.
    
  0.676
psma8
Proteasome 20S subunit alpha 8.
    
  0.672
vps35
VPS35 retromer complex component.
    
 
 0.648
LOC114859825
Neurotrophin-3-like.
    
 
 0.633
nts
Neurotensin.
    
 
 0.626
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.