STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptprhProtein tyrosine phosphatase receptor type H. (1179 aa)    
Predicted Functional Partners:
LOC114866527
Tenascin-like.
    
 
0.833
tnn
Tenascin N.
    
 
0.833
tnr
Tenascin R.
    
 
0.833
LOC114845776
Tenascin-like.
    
 
0.833
mst1r
Macrophage stimulating 1 receptor.
    
 0.773
met
MET proto-oncogene, receptor tyrosine kinase.
    
 0.773
LOC114856141
Macrophage-stimulating protein receptor-like.
    
 0.773
ctnnb1
Catenin beta 1.
    
 0.734
LOC114865743
Catenin beta-1-like.
    
 0.714
rpl13a
Ribosomal protein L13a.
   
  0.664
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.