STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114864131Cytochrome c oxidase assembly protein COX18, mitochondrial. (345 aa)    
Predicted Functional Partners:
LOC114855673
Protein transport protein Sec61 subunit alpha-like 1.
   
 0.950
LOC114856187
Protein transport protein Sec61 subunit alpha-like 1.
   
 0.950
mrpl45
Mitochondrial ribosomal protein L45.
   
 
 0.928
srp54
Signal recognition particle 54.
  
 0.928
srpra
SRP receptor subunit alpha.
  
 
 0.908
LOC114842089
Cytochrome c oxidase assembly protein COX15 homolog.
     
 0.890
LOC114857384
39S ribosomal protein L23, mitochondrial-like.
   
 
 0.882
mrpl17
Mitochondrial ribosomal protein L17.
  
 
 0.875
mrps9
Mitochondrial ribosomal protein S9.
  
   0.870
mrpl12
Mitochondrial ribosomal protein L12.
   
 
 0.857
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.