STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chd9Chromodomain helicase DNA binding protein 9. (2999 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.958
ruvbl1
RuvB like AAA ATPase 1.
    
 0.884
ruvbl2
RuvB like AAA ATPase 2.
   
 0.881
dpy30
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 0.864
ino80c
INO80 complex subunit C.
    
 0.845
trrap
Transformation/transcription domain associated protein.
   
 0.843
ctnnb1
Catenin beta 1.
   
 0.836
polr2c
RNA polymerase II subunit C.
   
 0.822
rbbp5
RB binding protein 5, histone lysine methyltransferase complex subunit.
   
 0.820
ssrp1
Structure specific recognition protein 1.
    
 0.817
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.