STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tfb2mTranscription factor B2, mitochondrial. (451 aa)    
Predicted Functional Partners:
tsr1
TSR1 ribosome maturation factor.
   
 0.998
bysl
Bystin like.
   
 0.998
fau
FAU ubiquitin like and ribosomal protein S30 fusion.
    
   0.995
LOC114842947
Periodic tryptophan protein 2 homolog.
   
 0.994
polrmt
RNA polymerase mitochondrial.
   
 0.994
imp4
IMP U3 small nucleolar ribonucleoprotein 4.
   
  0.993
wdr3
WD repeat domain 3.
   
  0.992
wdr36
WD repeat domain 36.
   
  0.991
wdr46
WD repeat domain 46.
   
  0.991
utp18
UTP18 small subunit processome component.
   
  0.989
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.