STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trpc1Transient receptor potential cation channel subfamily C member 1. (796 aa)    
Predicted Functional Partners:
trpc4
Transient receptor potential cation channel subfamily C member 4.
  
 
0.897
LOC114868544
Short transient receptor potential channel 4-like.
  
 
0.897
LOC114849847
Short transient receptor potential channel 5-like.
  
 
0.896
bmpr2
Bone morphogenetic protein receptor type 2.
    
 0.862
LOC114869102
Stromal interaction molecule 1-like.
    
 0.828
LOC114867968
Stromal interaction molecule 1-like.
    
 0.828
TRPC6-2
Transient receptor potential cation channel subfamily C member 6.
  
 
0.819
stim2
Stromal interaction molecule 2.
    
 0.817
LOC114848132
Stromal interaction molecule 2-like.
    
 0.817
TRPC6
Short transient receptor potential channel 6-like.
  
 
0.816
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.