STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX41DEAD-box helicase 41. (622 aa)    
Predicted Functional Partners:
nkap
NFKB activating protein.
    
  0.892
dhx38
DEAH-box helicase 38.
   
 0.781
dhx8
DEAH-box helicase 8.
   
 0.773
dhx34
DExH-box helicase 34.
   
 0.773
dhx35
DEAH-box helicase 35.
   
 0.769
dhx33
DEAH-box helicase 33.
   
 0.768
ddx39a
DExD-box helicase 39A.
  
0.764
dhx9
DExH-box helicase 9.
    
 0.760
srrm1
Serine and arginine repetitive matrix 1.
    
  0.747
cdc40
Cell division cycle 40.
    
  0.747
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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