STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nod1Nucleotide binding oligomerization domain containing 1. (949 aa)    
Predicted Functional Partners:
ripk2
Receptor interacting serine/threonine kinase 2.
   
 0.973
sugt1
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.
    
 0.905
atg16l1
Autophagy related 16 like 1.
    
 0.897
LOC114867572
Autophagy-related protein 16-2-like.
    
 0.897
LOC114848314
Flocculation protein FLO11-like.
    
 0.889
erbin
Erbb2 interacting protein.
    
 0.872
atg5
Autophagy related 5.
     
 0.840
lrrc7
Leucine rich repeat containing 7.
    
 0.827
ENSBSLP00000000233
annotation not available
    
 0.824
atg12
Autophagy related 12.
     
 0.824
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.