STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mfsd1Major facilitator superfamily domain containing 1. (520 aa)    
Predicted Functional Partners:
LOC114864912
Malate synthase-like.
  
 0.876
gapdh
Glyceraldehyde-3-phosphate dehydrogenase.
   
 0.603
LOC114843158
Glyceraldehyde-3-phosphate dehydrogenase 2.
   
 0.603
tk1
Thymidine kinase 1.
     
 0.599
ephx2
Epoxide hydrolase 2.
    
 0.582
tyms
Thymidylate synthetase.
    
  0.580
cstf3
Cleavage stimulation factor subunit 3.
    
 0.573
LOC114847215
Thioredoxin domain-containing protein 3 homolog.
   
 0.551
nme7
NME/NM23 family member 7.
    
  0.506
nme3
NME/NM23 nucleoside diphosphate kinase 3.
    
  0.506
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.