STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114852358Zinc finger protein 408-like. (856 aa)    
Predicted Functional Partners:
gpatch3
G-patch domain containing 3.
   
    0.964
LOC114867200
Proteinase-activated receptor 1-like.
    
  0.808
serpind1
Serpin family D member 1.
    
  0.804
fgg
Fibrinogen gamma chain.
    
  0.789
fga
Fibrinogen alpha chain.
    
  0.789
rnf25
Ring finger protein 25.
   
    0.712
LOC114849592
Thrombomodulin-like.
    
  0.666
LOC114849591
Thrombomodulin-like.
    
  0.666
LOC114848272
Complement component C1q receptor-like.
    
  0.666
mvk
Mevalonate kinase.
   
 
 0.649
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.