STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
timp4TIMP metallopeptidase inhibitor 4. (270 aa)    
Predicted Functional Partners:
mmp9
Matrix metallopeptidase 9.
    
 0.769
LOC114870277
Hemopexin-like.
    
 0.744
MMP1
Stromelysin-2-like.
    
 0.714
LOC114847220
Hemopexin-like.
    
 0.700
mmp15
Matrix metallopeptidase 15.
    
 0.691
LOC114844813
Matrix metalloproteinase-14-like.
    
 0.691
mmp28
Matrix metallopeptidase 28.
    
 0.680
LOC114868594
Matrix metalloproteinase-20-like.
    
 0.617
LOC114868595
Collagenase 3-like.
    
 0.617
LOC114869183
Collagenase 3-like.
    
 0.617
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.