STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdc1Mediator of DNA damage checkpoint 1. (1632 aa)    
Predicted Functional Partners:
kdm6b
Lysine demethylase 6B.
    
 0.991
LOC114866962
Histone demethylase UTY-like.
    
 0.991
ENSBSLP00000001662
annotation not available
    
 0.991
kdm6a
Lysine demethylase 6A.
    
 0.991
LOC114870008
Uncharacterized LOC114870008.
    
 0.991
tp53bp1
Tumor protein p53 binding protein 1.
    
 0.973
atm
ATM serine/threonine kinase.
   
 0.968
rbbp5
RB binding protein 5, histone lysine methyltransferase complex subunit.
   
 0.963
ash2l
ASH2 like, histone lysine methyltransferase complex subunit.
    
 0.961
ncoa6
Nuclear receptor coactivator 6.
    
 0.953
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.