STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSBSLP00000019195Immunity-related GTPase family, f3. (256 aa)    
Predicted Functional Partners:
prkn
Parkin RBR E3 ubiquitin protein ligase.
    
  0.835
ENSBSLP00000037601
Ubiquitin B.
   
  0.831
rps27a
Ribosomal protein S27a.
   
  0.830
tomm70
Translocase of outer mitochondrial membrane 70.
    
 0.825
slc25a32
Solute carrier family 25 member 32.
    
  0.825
LOC114846116
Ubiquitin-conjugating enzyme E2 L3.
   
 
  0.812
ENSBSLP00000016923
annotation not available
    
  0.807
mtx3
Metaxin 3.
    
 0.803
LOC114842747
Metaxin-1-like.
    
 0.803
LOC114860417
Mitochondrial Rho GTPase 1-A.
   
 0.790
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.