STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSBSLP00000019533annotation not available (106 aa)    
Predicted Functional Partners:
wdr18
WD repeat domain 18.
   
 0.580
rhbdl3
Rhomboid like 3.
    
  0.573
tex10
Testis expressed 10.
    
 0.559
pes1
Pescadillo ribosomal biogenesis factor 1.
   
 0.543
ripk4
Receptor interacting serine/threonine kinase 4.
   
 0.485
LOC114866140
H-2 class I histocompatibility antigen, Q9 alpha chain-like.
    
  0.482
LOC114851280
H-2 class II histocompatibility antigen, A-U alpha chain-like.
   
  0.479
LOC114850360
H-2 class II histocompatibility antigen, A-U alpha chain-like.
   
  0.479
cenpn
Centromere protein N.
    
  0.479
LOC114842434
H-2 class II histocompatibility antigen, A-U alpha chain-like.
   
  0.479
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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