adra1b protein (Betta splendens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

adra1b

Adrenoceptor alpha 1B. (508 aa)

Predicted Functional Partners:

LOC114860741

0.867

LOC114861905

0.866

LOC114861667

0.866

LOC114848961

0.866

LOC114854338

0.858

LOC114845814

0.820

gna12

0.820

LOC114853974

0.748

gnal

0.748

LOC114855085

0.748

Your Current Organism:

Betta splendens

NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC114845814	LOC114848961	ENSBSLP00000029506	ENSBSLP00000052734	Guanine nucleotide-binding protein subunit alpha-13-like.	Guanine nucleotide-binding protein G(q) subunit alpha-like.	0.661
LOC114845814	LOC114853974	ENSBSLP00000029506	ENSBSLP00000024806	Guanine nucleotide-binding protein subunit alpha-13-like.	Guanine nucleotide-binding protein G(olf) subunit alpha-like.	0.732
LOC114845814	LOC114854338	ENSBSLP00000029506	ENSBSLP00000008871	Guanine nucleotide-binding protein subunit alpha-13-like.	Guanine nucleotide-binding protein subunit alpha-11-like.	0.739
LOC114845814	LOC114855085	ENSBSLP00000029506	ENSBSLP00000055023	Guanine nucleotide-binding protein subunit alpha-13-like.	Guanine nucleotide-binding protein G(s) subunit alpha-like.	0.735
LOC114845814	LOC114860741	ENSBSLP00000029506	ENSBSLP00000023225	Guanine nucleotide-binding protein subunit alpha-13-like.	Guanine nucleotide-binding protein subunit alpha-13-like.	0.811
LOC114845814	LOC114861667	ENSBSLP00000029506	ENSBSLP00000039439	Guanine nucleotide-binding protein subunit alpha-13-like.	Guanine nucleotide-binding protein G(q) subunit alpha.	0.661
LOC114845814	LOC114861905	ENSBSLP00000029506	ENSBSLP00000039404	Guanine nucleotide-binding protein subunit alpha-13-like.	Guanine nucleotide-binding protein subunit alpha-14-like.	0.662
LOC114845814	adra1b	ENSBSLP00000029506	ENSBSLP00000019729	Guanine nucleotide-binding protein subunit alpha-13-like.	Adrenoceptor alpha 1B.	0.820
LOC114845814	gnal	ENSBSLP00000029506	ENSBSLP00000052483	Guanine nucleotide-binding protein subunit alpha-13-like.	G protein subunit alpha L.	0.731
LOC114848961	LOC114845814	ENSBSLP00000052734	ENSBSLP00000029506	Guanine nucleotide-binding protein G(q) subunit alpha-like.	Guanine nucleotide-binding protein subunit alpha-13-like.	0.661
LOC114848961	LOC114853974	ENSBSLP00000052734	ENSBSLP00000024806	Guanine nucleotide-binding protein G(q) subunit alpha-like.	Guanine nucleotide-binding protein G(olf) subunit alpha-like.	0.656
LOC114848961	LOC114854338	ENSBSLP00000052734	ENSBSLP00000008871	Guanine nucleotide-binding protein G(q) subunit alpha-like.	Guanine nucleotide-binding protein subunit alpha-11-like.	0.806
LOC114848961	LOC114855085	ENSBSLP00000052734	ENSBSLP00000055023	Guanine nucleotide-binding protein G(q) subunit alpha-like.	Guanine nucleotide-binding protein G(s) subunit alpha-like.	0.659
LOC114848961	LOC114860741	ENSBSLP00000052734	ENSBSLP00000023225	Guanine nucleotide-binding protein G(q) subunit alpha-like.	Guanine nucleotide-binding protein subunit alpha-13-like.	0.662
LOC114848961	LOC114861667	ENSBSLP00000052734	ENSBSLP00000039439	Guanine nucleotide-binding protein G(q) subunit alpha-like.	Guanine nucleotide-binding protein G(q) subunit alpha.	0.839
LOC114848961	LOC114861905	ENSBSLP00000052734	ENSBSLP00000039404	Guanine nucleotide-binding protein G(q) subunit alpha-like.	Guanine nucleotide-binding protein subunit alpha-14-like.	0.530
LOC114848961	adra1b	ENSBSLP00000052734	ENSBSLP00000019729	Guanine nucleotide-binding protein G(q) subunit alpha-like.	Adrenoceptor alpha 1B.	0.866
LOC114848961	gna12	ENSBSLP00000052734	ENSBSLP00000034660	Guanine nucleotide-binding protein G(q) subunit alpha-like.	G protein subunit alpha 12.	0.662
LOC114848961	gnal	ENSBSLP00000052734	ENSBSLP00000052483	Guanine nucleotide-binding protein G(q) subunit alpha-like.	G protein subunit alpha L.	0.654
LOC114853974	LOC114845814	ENSBSLP00000024806	ENSBSLP00000029506	Guanine nucleotide-binding protein G(olf) subunit alpha-like.	Guanine nucleotide-binding protein subunit alpha-13-like.	0.732