STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ube4bUbiquitination factor E4B. (1374 aa)    
Predicted Functional Partners:
yod1
YOD1 deubiquitinase.
    
 
 0.948
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.945
birc6
Baculoviral IAP repeat containing 6.
   
 0.944
trip12
Thyroid hormone receptor interactor 12.
   
 0.943
ubqln4
Ubiquilin 4.
   
 0.937
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
   
 0.923
rad23a
RAD23 homolog A, nucleotide excision repair protein.
   
 0.923
LOC114851360
Transitional endoplasmic reticulum ATPase-like.
  
 
 0.919
vcp
Valosin containing protein.
  
 
 0.919
nsfl1c
NSFL1 cofactor.
    
 
 0.910
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.