STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc25a19Solute carrier family 25 member 19. (328 aa)    
Predicted Functional Partners:
fau
FAU ubiquitin like and ribosomal protein S30 fusion.
   
   0.898
rpl14
Ribosomal protein L14.
   
 
 0.845
rpl27
Ribosomal protein L27.
   
 
 0.793
rpl8
Ribosomal protein L8.
   
 
 0.726
sucla2
succinate-CoA ligase ADP-forming beta subunit.
     
 0.722
rpl6
Ribosomal protein L6.
   
 
 0.712
rps29
Ribosomal protein S29.
   
 0.706
rps23
Ribosomal protein S23.
   
 
 0.699
LOC114860271
40S ribosomal protein SA.
   
  0.699
rpl28
Ribosomal protein L28.
   
   0.698
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.