STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sptlc3Serine palmitoyltransferase long chain base subunit 3. (664 aa)    
Predicted Functional Partners:
sptlc1
Serine palmitoyltransferase long chain base subunit 1.
  
0.981
sptssa
Serine palmitoyltransferase small subunit A.
    
 0.906
sord
Sorbitol dehydrogenase.
  
 
 0.854
kdsr
3-ketodihydrosphingosine reductase.
     
 0.852
ormdl2
ORMDL sphingolipid biosynthesis regulator 2.
    
 0.842
ormdl1
ORMDL sphingolipid biosynthesis regulator 1.
    
 0.842
LOC114846511
ORM1-like protein 3.
    
 0.842
LOC114842174
L-threonine ammonia-lyase-like.
   
 0.824
SDS
Serine dehydratase.
   
 0.824
eprs1
glutamyl-prolyl-tRNA synthetase 1.
   
 0.823
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.