STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ism1Isthmin 1. (518 aa)    
Predicted Functional Partners:
sptlc1
Serine palmitoyltransferase long chain base subunit 1.
 
 
 0.973
sptssa
Serine palmitoyltransferase small subunit A.
    
 0.906
sord
Sorbitol dehydrogenase.
  
 
 0.854
ormdl2
ORMDL sphingolipid biosynthesis regulator 2.
    
 0.842
ormdl1
ORMDL sphingolipid biosynthesis regulator 1.
    
 0.842
LOC114846511
ORM1-like protein 3.
    
 0.842
eprs1
glutamyl-prolyl-tRNA synthetase 1.
   
 0.823
kdsr
3-ketodihydrosphingosine reductase.
     
 0.821
SDS
Serine dehydratase.
   
 0.787
LOC114844589
Cystathionine beta-synthase-like.
    
 0.780
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.