STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114869665F-box only protein 40-like. (727 aa)    
Predicted Functional Partners:
fau
FAU ubiquitin like and ribosomal protein S30 fusion.
   
  0.966
frem1
FRAS1 related extracellular matrix 1.
    
 0.810
skp1
S-phase kinase associated protein 1.
    
 0.733
cul1
Cullin 1.
    
 0.731
LOC114844574
NEDD8.
   
  0.727
LOC114867597
NEDD8-like.
   
  0.727
gle1
GLE1 RNA export mediator.
    
 0.701
rps28
Ribosomal protein S28.
   
  0.690
ENSBSLP00000056556
Ribosomal protein S15.
   
  0.686
rps11
Ribosomal protein S11.
   
 0.673
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.