STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hoxc6Homeobox C6. (235 aa)    
Predicted Functional Partners:
hoxc9
Homeobox C9.
   
 
0.975
LOC114858390
Homeobox protein Hox-C5a-like.
   
  
0.943
hoxc4
Homeobox C4.
  
 
0.867
LOC114865826
Homeobox protein Hox-A4.
   
 
0.861
LOC114870641
Homeobox protein Hox-D4b-like.
   
 
0.861
LOC114859900
Homeobox protein Hox-B7-B-like.
   
 
0.836
HOXA7
Homeobox protein Hox-A7-like.
   
  
0.810
LOC114846289
Homeobox protein Hox-B6b.
  
  
0.769
LOC114859899
Homeobox protein Hox-B6a-like.
   
  
0.764
LOC114847112
Homeobox protein Hox-D4a.
   
  
0.753
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.