STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lyrm9LYR motif containing 9. (82 aa)    
Predicted Functional Partners:
trmt6
tRNA methyltransferase 6.
   
  
 0.572
pus1
Pseudouridine synthase 1.
   
  
 0.558
mettl1
Methyltransferase like 1.
   
  
 0.553
lyrm1
LYR motif containing 1.
      
 0.526
ENSBSLP00000050898
annotation not available
      
 0.526
ftsj1
FtsJ RNA 2'-O-methyltransferase 1.
   
  
 0.489
ENSBSLP00000051879
annotation not available
      
 0.472
pus3
Pseudouridine synthase 3.
   
  
 0.457
pusl1
Pseudouridine synthase like 1.
   
  
 0.453
wdr4
WD repeat domain 4.
   
  
 0.444
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.