STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sacm1lSAC1 like phosphatidylinositide phosphatase. (614 aa)    
Predicted Functional Partners:
inpp5b
Inositol polyphosphate-5-phosphatase B.
 
  
 0.984
ocrl
OCRL inositol polyphosphate-5-phosphatase.
 
  
 0.983
pi4ka
Phosphatidylinositol 4-kinase alpha.
    
 0.957
inpp5e
Inositol polyphosphate-5-phosphatase E.
 
  
 0.926
synj1
Synaptojanin 1.
    
0.908
LOC114862180
Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A-like.
 
  
 0.902
pikfyve
Phosphoinositide kinase, FYVE-type zinc finger containing.
    
 0.900
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.888
LOC114866780
Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A-like.
 
  
 0.884
sptlc1
Serine palmitoyltransferase long chain base subunit 1.
   
 0.876
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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