STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gpatch1G-patch domain containing 1. (986 aa)    
Predicted Functional Partners:
syf2
SYF2 pre-mRNA splicing factor.
    
  0.949
wdr83
WD repeat domain 83.
    
 
 0.942
ccdc12
Coiled-coil domain containing 12.
    
 0.933
plrg1
Pleiotropic regulator 1.
    
 
 0.911
yju2
YJU2 splicing factor homolog.
    
  0.889
prpf19
pre-mRNA processing factor 19.
    
 
 0.868
eapp
E2F associated phosphoprotein.
    
   0.850
cdc40
Cell division cycle 40.
    
  0.848
srrm1
Serine and arginine repetitive matrix 1.
     
 0.833
mtrex
Mtr4 exosome RNA helicase.
   
 0.826
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.