STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114864548Atlastin-3-like. (591 aa)    
Predicted Functional Partners:
uevld
UEV and lactate/malate dehyrogenase domains.
   
 
 0.636
LOC114845179
reticulon-3-B-like.
    
 
 0.599
spast
Spastin.
   
 
 0.576
LOC114848473
Receptor expression-enhancing protein 1-like.
    
 
 0.538
LOC114867785
Reticulon-2-like.
    
 
 0.523
ENSBSLP00000029717
Reticulon 2b.
    
 
 0.513
rtn1
Reticulon 1.
    
 
 0.492
LOC114841986
Reticulon-4-like.
    
 
 0.456
sec62
SEC62 homolog, preprotein translocation factor.
    
 
 0.422
katnal2
Katanin catalytic subunit A1 like 2.
   
 
 0.420
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.