STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114867137Heterogeneous nuclear ribonucleoprotein D0-like. (317 aa)    
Predicted Functional Partners:
tep1
Telomerase associated protein 1.
   
 0.925
srsf2
Serine and arginine rich splicing factor 2.
  
 0.833
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.814
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 0.796
LOC114845192
Heterogeneous nuclear ribonucleoprotein C-like.
   
 0.792
fau
FAU ubiquitin like and ribosomal protein S30 fusion.
   
  0.748
LOC114866707
Heterogeneous nuclear ribonucleoprotein K-like.
   
 0.744
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.744
cstf2
Cleavage stimulation factor subunit 2.
  
 
 0.741
LOC114849981
Heterogeneous nuclear ribonucleoprotein Q.
   
0.738
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.