STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ncaphnon-SMC condensin I complex subunit H. (688 aa)    
Predicted Functional Partners:
smc4
Structural maintenance of chromosomes 4.
   
 0.999
ncapg
non-SMC condensin I complex subunit G.
   
 0.999
smc2
Structural maintenance of chromosomes 2.
   
 0.999
ncapd2
non-SMC condensin I complex subunit D2.
   
 0.999
ncapg2
non-SMC condensin II complex subunit G2.
   
 0.991
ncapd3
non-SMC condensin II complex subunit D3.
   
 0.984
ncaph2
non-SMC condensin II complex subunit H2.
   
 
 0.976
smc5
Structural maintenance of chromosomes 5.
   
 0.956
smc3
Structural maintenance of chromosomes 3.
   
 0.955
rbm20
RNA binding motif protein 20.
   
 0.945
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.