STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yif1aYip1 interacting factor homolog A, membrane trafficking protein. (308 aa)    
Predicted Functional Partners:
yipf5
Yip1 domain family member 5.
   
 
 0.905
selenos
Selenoprotein S.
   
 
 0.902
yipf4
Yip1 domain family member 4.
   
 
 0.818
rabac1
Rab acceptor 1.
   
 
 0.804
maea
Macrophage erythroblast attacher.
   
 
 0.734
LOC114867379
Protein unc-50 homolog.
      
 0.542
IER3IP1
Immediate early response 3-interacting protein 1.
    
 
 0.522
LOC114849459
Ras-related protein Rab-1A-like.
   
 
 0.499
LOC114857872
Ras-related protein ORAB-1.
   
 
 0.499
LOC114868447
Ras-related protein ORAB-1-like.
   
 
 0.499
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.