STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114862571Transcription intermediary factor 1-alpha-like. (896 aa)    
Predicted Functional Partners:
smarcad1
annotation not available
   
 
 0.743
anapc4
Anaphase promoting complex subunit 4.
   
  0.719
ENSBSLP00000037601
Ubiquitin B.
    
  0.717
rps27a
Ribosomal protein S27a.
    
  0.713
cdc27
Cell division cycle 27.
   
  0.708
bub1b
BUB1 mitotic checkpoint serine/threonine kinase B.
    
   0.697
cdc16
Cell division cycle 16.
    
   0.697
anapc7
Anaphase promoting complex subunit 7.
    
   0.697
anapc5
Anaphase promoting complex subunit 5.
    
  0.697
cdc23
Cell division cycle 23.
    
   0.697
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.