STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114862997Derlin-2-like. (237 aa)    
Predicted Functional Partners:
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
   
 0.984
derl1
Derlin 1.
    
0.980
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
   
 0.974
ENSBSLP00000041366
FA core complex associated protein 100.
    
 0.968
nploc4
NPL4 homolog, ubiquitin recognition factor.
    
 0.968
erlec1
Endoplasmic reticulum lectin 1.
    
 0.964
os9
OS9 endoplasmic reticulum lectin.
    
 0.964
syvn1
Synoviolin 1.
   
 0.963
LOC114857283
E3 ubiquitin-protein ligase AMFR-like.
   
 0.961
LOC114853283
Protein sel-1 homolog 3-like.
   
 0.961
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.