STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hdxHighly divergent homeobox. (783 aa)    
Predicted Functional Partners:
stx18
Syntaxin 18.
    
 0.853
use1
Unconventional SNARE in the ER 1.
    
 0.850
rint1
RAD50 interactor 1.
    
 0.843
zw10
Zw10 kinetochore protein.
    
 0.814
nbas
NBAS subunit of NRZ tethering complex.
    
 0.807
ykt6
YKT6 v-SNARE homolog.
    
 0.664
sec22c
SEC22 homolog C, vesicle trafficking protein.
   
 0.643
LOC114853002
Vesicle-trafficking protein SEC22b-B.
   
 0.643
LOC114844455
Vesicle-trafficking protein SEC22b-like.
   
 0.643
sec22a
SEC22 homolog A, vesicle trafficking protein.
   
 0.643
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.