STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114848256Retinol dehydrogenase 11-like. (361 aa)    
Predicted Functional Partners:
aarsd1-2
alanyl-tRNA synthetase domain containing 1.
  
 0.799
pnpla4
Patatin like phospholipase domain containing 4.
     
 0.794
fdx1
Ferredoxin 1.
  
 0.716
fdx2
Ferredoxin 2.
  
 0.716
oxsm
3-oxoacyl-ACP synthase, mitochondrial.
  
 0.710
mcat
malonyl-CoA-acyl carrier protein transacylase.
  
 0.692
LOC114846450
Cytochrome P450 26A1.
  
 
 0.689
LOC114845854
Inactive all-trans-retinol 13,14-reductase-like.
    
 0.685
retsat
Retinol saturase.
    
 0.685
LOC114852263
Cytochrome P450 27C1-like.
  
 
  0.671
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.