STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114860489Peroxisomal membrane protein PMP34-like. (315 aa)    
Predicted Functional Partners:
pex19
Peroxisomal biogenesis factor 19.
   
 0.904
slc25a17
Solute carrier family 25 member 17.
  
  
 
0.840
pex13
Peroxisomal biogenesis factor 13.
   
 
 0.786
pex12
Peroxisomal biogenesis factor 12.
     
 0.778
RPL36A
60S ribosomal protein L36a.
   
 
 0.776
pex16
Peroxisomal biogenesis factor 16.
   
 
 0.770
pex11b
Peroxisomal biogenesis factor 11 beta.
   
 0.745
LOC114857938
Peroxisomal membrane protein 11A-like.
   
 0.745
abcd3
ATP binding cassette subfamily D member 3.
   
 
 0.737
pex3
Peroxisomal biogenesis factor 3.
   
 
 0.730
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.