LOC114858424 protein (Betta splendens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC114858424

RNA-binding protein 38-like. (256 aa)

Predicted Functional Partners:

LOC114858124

0.755

LOC114860228

0.745

LOC114842767

0.715

sf3b4

0.592

LOC114848281

0.581

ELAVL2

0.556

elavl3

0.554

sf3b5

0.531

sf3b1

0.528

sf3b3

0.516

Your Current Organism:

Betta splendens

NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELAVL2	LOC114842767	ENSBSLP00000001203	ENSBSLP00000036093	ELAV like RNA binding protein 2.	RNA binding protein fox-1 homolog 1-like.	0.603
ELAVL2	LOC114858124	ENSBSLP00000001203	ENSBSLP00000023096	ELAV like RNA binding protein 2.	RNA binding protein fox-1 homolog 2-like.	0.473
ELAVL2	LOC114858424	ENSBSLP00000001203	ENSBSLP00000023282	ELAV like RNA binding protein 2.	RNA-binding protein 38-like.	0.556
ELAVL2	LOC114860228	ENSBSLP00000001203	ENSBSLP00000023231	ELAV like RNA binding protein 2.	RNA binding protein fox-1 homolog 2-like.	0.470
LOC114842767	ELAVL2	ENSBSLP00000036093	ENSBSLP00000001203	RNA binding protein fox-1 homolog 1-like.	ELAV like RNA binding protein 2.	0.603
LOC114842767	LOC114848281	ENSBSLP00000036093	ENSBSLP00000055669	RNA binding protein fox-1 homolog 1-like.	ELAV-like protein 1.	0.622
LOC114842767	LOC114858424	ENSBSLP00000036093	ENSBSLP00000023282	RNA binding protein fox-1 homolog 1-like.	RNA-binding protein 38-like.	0.715
LOC114842767	elavl3	ENSBSLP00000036093	ENSBSLP00000038596	RNA binding protein fox-1 homolog 1-like.	ELAV like RNA binding protein 3.	0.606
LOC114848281	LOC114842767	ENSBSLP00000055669	ENSBSLP00000036093	ELAV-like protein 1.	RNA binding protein fox-1 homolog 1-like.	0.622
LOC114848281	LOC114858124	ENSBSLP00000055669	ENSBSLP00000023096	ELAV-like protein 1.	RNA binding protein fox-1 homolog 2-like.	0.514
LOC114848281	LOC114858424	ENSBSLP00000055669	ENSBSLP00000023282	ELAV-like protein 1.	RNA-binding protein 38-like.	0.581
LOC114848281	LOC114860228	ENSBSLP00000055669	ENSBSLP00000023231	ELAV-like protein 1.	RNA binding protein fox-1 homolog 2-like.	0.505
LOC114858124	ELAVL2	ENSBSLP00000023096	ENSBSLP00000001203	RNA binding protein fox-1 homolog 2-like.	ELAV like RNA binding protein 2.	0.473
LOC114858124	LOC114848281	ENSBSLP00000023096	ENSBSLP00000055669	RNA binding protein fox-1 homolog 2-like.	ELAV-like protein 1.	0.514
LOC114858124	LOC114858424	ENSBSLP00000023096	ENSBSLP00000023282	RNA binding protein fox-1 homolog 2-like.	RNA-binding protein 38-like.	0.755
LOC114858124	elavl3	ENSBSLP00000023096	ENSBSLP00000038596	RNA binding protein fox-1 homolog 2-like.	ELAV like RNA binding protein 3.	0.473
LOC114858424	ELAVL2	ENSBSLP00000023282	ENSBSLP00000001203	RNA-binding protein 38-like.	ELAV like RNA binding protein 2.	0.556
LOC114858424	LOC114842767	ENSBSLP00000023282	ENSBSLP00000036093	RNA-binding protein 38-like.	RNA binding protein fox-1 homolog 1-like.	0.715
LOC114858424	LOC114848281	ENSBSLP00000023282	ENSBSLP00000055669	RNA-binding protein 38-like.	ELAV-like protein 1.	0.581
LOC114858424	LOC114858124	ENSBSLP00000023282	ENSBSLP00000023096	RNA-binding protein 38-like.	RNA binding protein fox-1 homolog 2-like.	0.755