STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fechFerrochelatase. (419 aa)    
Predicted Functional Partners:
ppox
Protoporphyrinogen oxidase.
  
 
 0.991
FXN
Frataxin.
    
 0.975
urod
Uroporphyrinogen decarboxylase.
 
  
 0.949
coq2
Coenzyme Q2, polyprenyltransferase.
    
 0.940
LOC114842089
Cytochrome c oxidase assembly protein COX15 homolog.
  
 
 0.937
LOC114846050
Protoheme IX farnesyltransferase, mitochondrial.
   
 
 0.928
endov
Endonuclease V.
  
  
 0.927
rnls
Renalase, FAD dependent amine oxidase.
    
 0.921
LOC114853114
Ceruloplasmin-like.
  
 
 0.912
hmox2
Heme oxygenase 2.
    
 0.903
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.