STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114867482Histone H3.3. (141 aa)    
Predicted Functional Partners:
kdm6b
Lysine demethylase 6B.
   
 0.946
LOC114866962
Histone demethylase UTY-like.
   
 0.946
ENSBSLP00000001662
annotation not available
   
 0.946
kdm6a
Lysine demethylase 6A.
   
 0.946
LOC114870008
Uncharacterized LOC114870008.
   
 0.946
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.886
dot1l
DOT1 like histone lysine methyltransferase.
   
 0.846
setd2
SET domain containing 2, histone lysine methyltransferase.
   
 0.842
arid4b
AT-rich interaction domain 4B.
   
 0.840
H2AZ1
Histone H2A.Z.
   
 0.840
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.