STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdm3bLysine demethylase 3B. (1793 aa)    
Predicted Functional Partners:
actr8
Actin related protein 8.
    
  0.820
ash2l
ASH2 like, histone lysine methyltransferase complex subunit.
     
 0.812
LOC114846071
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2-like.
     
 0.810
rbbp5
RB binding protein 5, histone lysine methyltransferase complex subunit.
     
 0.809
mcrs1
Microspherule protein 1.
   
 
  0.800
PPARG
Peroxisome proliferator activated receptor gamma.
    
 0.793
PPARA
Peroxisome proliferator-activated receptor alpha-like.
    
 0.793
LOC114866972
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like.
    
 0.779
smarcb1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1.
    
 0.779
rpap3
RNA polymerase II associated protein 3.
   
 
 0.772
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.