STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps35VPS35 retromer complex component. (810 aa)    
Predicted Functional Partners:
vps26a
VPS26, retromer complex component A.
   
 0.999
vps29
VPS29 retromer complex component.
   
 0.999
snx2
Sorting nexin 2.
   
 0.995
tbc1d5
TBC1 domain family member 5.
   
 0.992
vps26b
VPS26, retromer complex component B.
   
 0.992
LOC114869772
Vacuolar protein sorting-associated protein 26B-like.
   
 0.992
snx8
Sorting nexin 8.
   
 0.986
snx1
Sorting nexin 1.
   
 0.985
LOC114857191
Sorting nexin-1-like.
   
 0.985
snx12
Sorting nexin 12.
   
 0.977
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.