STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114854610Protein phosphatase 1 regulatory subunit 12A-like. (936 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.742
ift81
Intraflagellar transport 81.
    
 0.620
rps3
Ribosomal protein S3.
    
 0.586
ift88
Intraflagellar transport 88.
   
 0.585
mars1
methionyl-tRNA synthetase 1.
   
 0.584
ift22
Intraflagellar transport 22.
    
 0.583
traf7
TNF receptor associated factor 7.
    
  0.577
wdr90
WD repeat domain 90.
   
 0.576
tmem254
Transmembrane protein 254.
   
 
 0.568
LOC114860524
Tetratricopeptide repeat protein 30A-like.
    
 0.567
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.