STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114866689E3 ubiquitin-protein ligase DTX4-like. (838 aa)    
Predicted Functional Partners:
LOC114852929
Neurogenic locus notch homolog protein 2-like.
    
 0.871
LOC114860352
Neurogenic locus notch homolog protein 2-like.
    
 0.865
LOC114867060
Neurogenic locus notch homolog protein 1-like.
    
 0.853
notch1
Notch receptor 1.
    
 0.853
rps27a
Ribosomal protein S27a.
    
  0.743
ENSBSLP00000037601
Ubiquitin B.
    
 0.722
LOC114857041
NEDD4-like E3 ubiquitin-protein ligase WWP2.
    
 0.718
wwp1
WW domain containing E3 ubiquitin protein ligase 1.
    
 0.718
LOC114858841
E3 ubiquitin-protein ligase Itchy-like.
    
 0.718
LOC114855782
E3 ubiquitin-protein ligase Itchy-like.
    
 0.718
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.