STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114860289pre-mRNA 3'-end-processing factor FIP1-like. (564 aa)    
Predicted Functional Partners:
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.999
cpsf2
Cleavage and polyadenylation specific factor 2.
    
 0.999
papolg
poly(A) polymerase gamma.
   
 0.999
cpsf4
Cleavage and polyadenylation specific factor 4.
    
 0.999
cstf3
Cleavage stimulation factor subunit 3.
   
 0.999
WDR33
WD repeat domain 33.
   
 0.999
sympk
Symplekin.
   
 0.999
cstf2
Cleavage stimulation factor subunit 2.
   
 0.998
nudt21
Nudix hydrolase 21.
   
 0.996
pcf11
PCF11 cleavage and polyadenylation factor subunit.
    
 0.995
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.