STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mindy2MINDY lysine 48 deubiquitinase 2. (646 aa)    
Predicted Functional Partners:
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
   0.856
ENSBSLP00000037601
Ubiquitin B.
    
   0.856
rps27a
Ribosomal protein S27a.
    
   0.812
mmut
methylmalonyl-CoA mutase.
    
 0.747
setd4
SET domain containing 4.
    
 0.747
setd3
SET domain containing 3, actin histidine methyltransferase.
    
 0.747
LOC114853555
E3 ubiquitin-protein ligase RNF126-like.
    
  0.595
LOC114844344
E3 ubiquitin-protein ligase RNF126-like.
    
  0.595
LOC114851162
Polyubiquitin-like.
    
   0.585
ENSBSLP00000003304
ISG15 ubiquitin like modifier.
    
   0.585
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.