STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sltmSAFB like transcription modulator. (998 aa)    
Predicted Functional Partners:
tep1
Telomerase associated protein 1.
   
 0.925
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.814
fau
FAU ubiquitin like and ribosomal protein S30 fusion.
   
  0.748
mysm1
Myb like, SWIRM and MPN domains 1.
   
 0.648
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.644
LOC114849870
RNA-binding protein 25-like.
   
 0.636
LOC114848380
RNA-binding protein 25-like.
   
 0.636
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 0.628
sf3b1
Splicing factor 3b subunit 1.
   
 0.625
sf3b2
Splicing factor 3b subunit 2.
   
 0.623
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.