STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrm3Mitochondrial rRNA methyltransferase 3. (469 aa)    
Predicted Functional Partners:
malsu1
Mitochondrial assembly of ribosomal large subunit 1.
   
 
 0.973
mrpl47
Mitochondrial ribosomal protein L47.
   
 
 0.960
mrpl13
Mitochondrial ribosomal protein L13.
  
 
 0.958
mrpl3
Mitochondrial ribosomal protein L3.
   
 
 0.954
mrpl17
Mitochondrial ribosomal protein L17.
  
 
 0.954
ddx28
DEAD-box helicase 28.
  
 
 0.952
mrpl15
Mitochondrial ribosomal protein L15.
  
   0.951
ENSBSLP00000005948
Mitochondrial ribosomal protein L21.
   
   0.950
mrpl11
Mitochondrial ribosomal protein L11.
   
 
 0.950
mrpl24
Mitochondrial ribosomal protein L24.
  
   0.950
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.