STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114866027Circularly permutated Ras protein 1-like. (510 aa)    
Predicted Functional Partners:
sec24c
SEC24 homolog C, COPII coat complex component.
   
 0.980
sec24d
SEC24 homolog D, COPII coat complex component.
   
 0.980
LOC114861680
Protein transport protein Sec24C-like.
   
 0.979
sec24a
SEC24 homolog A, COPII coat complex component.
   
 0.958
LOC114856205
Protein SEC13 homolog.
   
 0.952
LOC114855753
Protein SEC13 homolog.
   
 0.952
LOC114864668
Protein transport protein Sec24B-like.
   
 0.934
LOC114864653
Protein transport protein Sec24B-like.
   
 0.934
sec31a
SEC31 homolog A, COPII coat complex component.
   
 0.901
ankrd40
Ankyrin repeat domain 40.
   
 0.901
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.