STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
neil1Nei like DNA glycosylase 1. (405 aa)    
Predicted Functional Partners:
polb
DNA polymerase beta.
   
 0.876
xrcc1
X-ray repair cross complementing 1.
    
 0.865
ogg1
8-oxoguanine DNA glycosylase.
     
 0.831
pnkp
Polynucleotide kinase 3'-phosphatase.
     
 0.815
poll
DNA polymerase lambda.
   
 0.804
lig3
DNA ligase 3.
    
 0.778
rec114
REC114 meiotic recombination protein.
     
 0.761
dntt
DNA nucleotidylexotransferase.
   
 0.711
polm
DNA polymerase mu.
   
 0.711
enkd1
Enkurin domain containing 1.
   
 0.711
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.