STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSBSLP00000026024LTV1 ribosome biogenesis factor. (439 aa)    
Predicted Functional Partners:
riok2
RIO kinase 2.
   
 0.998
nob1
NIN1 (RPN12) binding protein 1 homolog.
   
 0.998
tsr1
TSR1 ribosome maturation factor.
   
 0.998
bysl
Bystin like.
   
 0.998
fau
FAU ubiquitin like and ribosomal protein S30 fusion.
    
  0.996
dimt1
DIMT1 rRNA methyltransferase and ribosome maturation factor.
   
 0.995
rps3
Ribosomal protein S3.
   
 0.989
riok1
RIO kinase 1.
   
 0.988
tfb2m
Transcription factor B2, mitochondrial.
   
  0.985
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
   
 0.985
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.